IndiNCA.Rd
It performs a noncompartmental analysis with one subject data. This will be deprecated. Use sNCA()
instead.
IndiNCA(x, y, dose = 0, fit = "Linear", adm = "Extravascular", dur = 0, report = "Table", iAUC = "", uTime = "h", uConc = "ug/L", uDose = "mg")
x | vector values of independent variable, usually time |
---|---|
y | vector values of dependent variable, usually concentration |
dose | administered dose for the subject |
fit | either of |
adm | one of |
dur | infusion duration for constant infusion, otherwise 0 |
report | either of |
iAUC | data.frame with three columns, "Name", "Start", "End" to specify the invervals for partial (interval) AUC |
uTime | unit of time |
uConc | unit of concentration |
uDose | unit of dose |
This performs a noncompartmental analysis for a subject. It returns practically the same result with the most popular commercial software.
maximum concentration, Cmax
dose normalized Cmax, CMAX / Dose, Cmax / Dose
time of maximum concentration, Tmax
time to observe the first non-zero concentration, for extravascular administration only
last positive concentration observed, Clast
last positive concentration predicted, Clast_pred
time of last positive concentration, Tlast
half-life by lambda z, ln(2)/LAMZ
lambda_z negative of best fit terminal slope
earliest time for LAMZ
last time for LAMZ
number of points for LAMZ
correlation of log(concentration) and time
R-squared
R-squared adjusted
back extrapolated concentration at time 0, for bolus intravascular administration only
AUC from 0 to TLST
AUC using all the given points, including trailing zero concentrations
AUC infinity observed
AUCIFO / Dose
AUC infinity predicted using CLSTP instead of CLST
AUCIFP / Dose
AUC % extrapolation observed
AUC % extrapolated for AUCIFP
AUC % back extrapolation observed, for bolus IV administration only
AUC % back extrapolation predicted with AUCIFP, for bolus IV administration only
AUMC to the TLST
AUMC infinity observed using CLST
AUMC infinity determined by CLSTP
AUMC % extrapolated observed
AUMC % extrapolated predicted
mean residence time (MRT) to TLST, for intravascular administration
mean residence time (MRT) infinity using CLST, for intravascular administration
mean residence time (MRT) infinity using CLSTP, for intravascular administration
mean residence time (MRT) to TLST, for extravascular administration
mean residence time (MRT) infinity using CLST, for extravascular administration
mean residence time (MRT) infinity using CLSTP, for extravascular administration
volume of distribution determined by LAMZ and AUCIFO, for intravascular administration
volume of distribution determined by LAMZ and AUCIFP, for intravascular administration
VZO for extravascular administration, VZO/F, F is bioavailability
VZP for extravascular administration, VZP/F, F is bioavailability
clearance using AUCIFO, for intravascular administration
clearance using AUCIFP, for intravascular administration
CLO for extravascular administration, CLO/F, F is bioavailability
CLP for extravascular administration, CLP/F, F is bioavailability
volume of distribution at steady state using CLST, for intravascular administration only
volume of distribution at stead state using CLSTP, for intravascular administration only
Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016.
Shargel L, Yu A. Applied Biopharmaceutics and Pharmacokinetics. 7th ed. 2015.
Rowland M, Tozer TN. Clinical Pharmacokinetics and Pharmacodynamics - Concepts and Applications. 4th ed. 2011.
Gibaldi M, Perrier D. Pharmacokinetics. 2nd ed. revised and expanded. 1982.
IndiNCA(Theoph[Theoph$Subject==1,"Time"], Theoph[Theoph$Subject==1, "conc"], dose=320, uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> 2.3687851 10.5000000 0.0328125 1.1200000 0.0000000 3.2800000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 3.2801465 24.3700000 14.3043776 0.0484570 9.0500000 24.3700000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.0000000 -0.9999999 0.9999997 0.9999995 NA 148.9230500 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 148.9230500 216.6119330 0.6769123 216.6149558 0.6769217 31.2489169 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 31.2498763 NA NA 1459.0711035 4505.5348194 4505.6708646 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 67.6160287 67.6170065 NA NA NA 9.7974834 #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> 20.8000305 20.8003683 NA NA 30.4867482 30.4863228 #> CLO CLP CLFO CLFP VSSO VSSP #> NA NA 1.4772963 1.4772757 NA NA #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L"IndiNCA(Indometh[Indometh$Subject==1,"time"], Indometh[Indometh$Subject==1, "conc"], dose=25, adm="Bolus", uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> -1.72421060 1.50000000 0.06000000 0.25000000 NA 0.05000000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 0.05024851 8.00000000 4.37812701 0.15832048 5.00000000 8.00000000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.00000000 -0.99853229 0.99706673 0.99413345 2.39361702 2.04045213 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 2.04045213 2.35626723 0.09425069 2.35783688 0.09431348 13.40319561 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 13.46084419 20.65564214 20.64189142 3.27125000 7.79255448 7.81502594 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 58.02082606 58.14153371 1.60319860 3.30716074 3.31448966 NA #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> NA NA 67.01597804 66.97136466 NA NA #> CLO CLP CLFO CLFP VSSO VSSP #> 10.61000197 10.60293876 NA NA 35.08898193 35.14333088 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L"IndiNCA(Indometh[Indometh$Subject==1,"time"], Indometh[Indometh$Subject==1, "conc"], dose=25, adm="Infusion", dur=0.25, uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> -1.72421060 1.50000000 0.06000000 0.25000000 0.00000000 0.05000000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 0.05024851 8.00000000 4.37812701 0.15832048 5.00000000 8.00000000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.00000000 -0.99853229 0.99706673 0.99413345 NA 1.74125000 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 1.74125000 2.05706511 0.08228260 2.05863475 0.08234539 15.35270349 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 15.41724428 NA NA 3.27125000 7.79255448 7.81502594 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 58.02082606 58.14153371 1.75367911 3.66319049 3.67121783 NA #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> NA NA 76.76351746 76.70498779 NA NA #> CLO CLP CLFO CLFP VSSO VSSP #> 12.15323712 12.14397067 NA NA 44.51962266 44.58316170 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L"IndiNCA(Theoph[Theoph$Subject==1,"Time"], Theoph[Theoph$Subject==1, "conc"], dose=320, report="Text", uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> 2.3687851 10.5000000 0.0328125 1.1200000 0.0000000 3.2800000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 3.2801465 24.3700000 14.3043776 0.0484570 9.0500000 24.3700000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.0000000 -0.9999999 0.9999997 0.9999995 NA 148.9230500 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 148.9230500 216.6119330 0.6769123 216.6149558 0.6769217 31.2489169 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 31.2498763 NA NA 1459.0711035 4505.5348194 4505.6708646 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 67.6160287 67.6170065 NA NA NA 9.7974834 #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> 20.8000305 20.8003683 NA NA 30.4867482 30.4863228 #> CLO CLP CLFO CLFP VSSO VSSP #> NA NA 1.4772963 1.4772757 NA NA #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L"IndiNCA(Indometh[Indometh$Subject==1,"time"], Indometh[Indometh$Subject==1, "conc"], dose=25, adm="Bolus", report="Text", uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> -1.72421060 1.50000000 0.06000000 0.25000000 NA 0.05000000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 0.05024851 8.00000000 4.37812701 0.15832048 5.00000000 8.00000000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.00000000 -0.99853229 0.99706673 0.99413345 2.39361702 2.04045213 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 2.04045213 2.35626723 0.09425069 2.35783688 0.09431348 13.40319561 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 13.46084419 20.65564214 20.64189142 3.27125000 7.79255448 7.81502594 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 58.02082606 58.14153371 1.60319860 3.30716074 3.31448966 NA #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> NA NA 67.01597804 66.97136466 NA NA #> CLO CLP CLFO CLFP VSSO VSSP #> 10.61000197 10.60293876 NA NA 35.08898193 35.14333088 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L"IndiNCA(Indometh[Indometh$Subject==1,"time"], Indometh[Indometh$Subject==1, "conc"], dose=25, adm="Infusion", dur=0.25, report="Text", uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> -1.72421060 1.50000000 0.06000000 0.25000000 0.00000000 0.05000000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 0.05024851 8.00000000 4.37812701 0.15832048 5.00000000 8.00000000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.00000000 -0.99853229 0.99706673 0.99413345 NA 1.74125000 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 1.74125000 2.05706511 0.08228260 2.05863475 0.08234539 15.35270349 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 15.41724428 NA NA 3.27125000 7.79255448 7.81502594 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 58.02082606 58.14153371 1.75367911 3.66319049 3.67121783 NA #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> NA NA 76.76351746 76.70498779 NA NA #> CLO CLP CLFO CLFP VSSO VSSP #> 12.15323712 12.14397067 NA NA 44.51962266 44.58316170 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L"iAUC = data.frame(Name=c("AUC[0-12h]","AUC[0-24h]"), Start=c(0,0), End=c(12,24)) ; iAUC#> Name Start End #> 1 AUC[0-12h] 0 12 #> 2 AUC[0-24h] 0 24IndiNCA(Theoph[Theoph$Subject==1,"Time"], Theoph[Theoph$Subject==1, "conc"], dose=320, iAUC=iAUC, uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> 2.3687851 10.5000000 0.0328125 1.1200000 0.0000000 3.2800000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 3.2801465 24.3700000 14.3043776 0.0484570 9.0500000 24.3700000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.0000000 -0.9999999 0.9999997 0.9999995 NA 148.9230500 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 148.9230500 216.6119330 0.6769123 216.6149558 0.6769217 31.2489169 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 31.2498763 NA NA 1459.0711035 4505.5348194 4505.6708646 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 67.6160287 67.6170065 NA NA NA 9.7974834 #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> 20.8000305 20.8003683 NA NA 30.4867482 30.4863228 #> CLO CLP CLFO CLFP VSSO VSSP #> NA NA 1.4772963 1.4772757 NA NA #> AUC[0-12h] AUC[0-24h] #> 91.7355220 147.6945866 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L" #> [49] "h*mg/L" "h*mg/L"IndiNCA(Indometh[Indometh$Subject==1,"time"], Indometh[Indometh$Subject==1, "conc"], dose=25, adm="Bolus", iAUC=iAUC, uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> -1.72421060 1.50000000 0.06000000 0.25000000 NA 0.05000000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 0.05024851 8.00000000 4.37812701 0.15832048 5.00000000 8.00000000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.00000000 -0.99853229 0.99706673 0.99413345 2.39361702 2.04045213 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 2.04045213 2.35626723 0.09425069 2.35783688 0.09431348 13.40319561 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 13.46084419 20.65564214 20.64189142 3.27125000 7.79255448 7.81502594 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 58.02082606 58.14153371 1.60319860 3.30716074 3.31448966 NA #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> NA NA 67.01597804 66.97136466 NA NA #> CLO CLP CLFO CLFP VSSO VSSP #> 10.61000197 10.60293876 NA NA 35.08898193 35.14333088 #> AUC[0-12h] AUC[0-24h] #> 2.18894711 2.33163353 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L" #> [49] "h*mg/L" "h*mg/L"IndiNCA(Indometh[Indometh$Subject==1,"time"], Indometh[Indometh$Subject==1, "conc"], dose=25, adm="Infusion", dur=0.25, iAUC=iAUC, uConc="mg/L")#> b0 CMAX CMAXD TMAX TLAG CLST #> -1.72421060 1.50000000 0.06000000 0.25000000 0.00000000 0.05000000 #> CLSTP TLST LAMZHL LAMZ LAMZLL LAMZUL #> 0.05024851 8.00000000 4.37812701 0.15832048 5.00000000 8.00000000 #> LAMZNPT CORRXY R2 R2ADJ C0 AUCLST #> 3.00000000 -0.99853229 0.99706673 0.99413345 NA 1.74125000 #> AUCALL AUCIFO AUCIFOD AUCIFP AUCIFPD AUCPEO #> 1.74125000 2.05706511 0.08228260 2.05863475 0.08234539 15.35270349 #> AUCPEP AUCPBEO AUCPBEP AUMCLST AUMCIFO AUMCIFP #> 15.41724428 NA NA 3.27125000 7.79255448 7.81502594 #> AUMCPEO AUMCPEP MRTIVLST MRTIVIFO MRTIVIFP MRTEVLST #> 58.02082606 58.14153371 1.75367911 3.66319049 3.67121783 NA #> MRTEVIFO MRTEVIFP VZO VZP VZFO VZFP #> NA NA 76.76351746 76.70498779 NA NA #> CLO CLP CLFO CLFP VSSO VSSP #> 12.15323712 12.14397067 NA NA 44.51962266 44.58316170 #> AUC[0-12h] AUC[0-24h] #> 1.88974498 2.03243140 #> attr(,"units") #> [1] "" "mg/L" "mg/L/mg" "h" "h" "mg/L" #> [7] "mg/L" "h" "h" "/h" "h" "h" #> [13] "" "" "" "" "mg/L" "h*mg/L" #> [19] "h*mg/L" "h*mg/L" "h*mg/L/mg" "h*mg/L" "h*mg/L/mg" "%" #> [25] "%" "%" "%" "h2*mg/L" "h2*mg/L" "h2*mg/L" #> [31] "%" "%" "h" "h" "h" "h" #> [37] "h" "h" "L" "L" "L" "L" #> [43] "L/h" "L/h" "L/h" "L/h" "L" "L" #> [49] "h*mg/L" "h*mg/L"